User: Ulrik Stervbo

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Posts by Ulrik Stervbo

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Analysis of Real Time PCR data
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20060817/ 037bf2a3/attachment.pl ...
written 12.8 years ago by Ulrik Stervbo80
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Cell cycle analysis of FACS data
... Hello everyone, This may be more of a general R question, but since there is some biology involved, I post it here. I did already post the question on the Purdue Cytometry mailing list without any luck. I am looking to analyse cell cycle data (percent cells in the G1, S and G2 phase, as well as su ...
rflowcyt cycle written 12.9 years ago by Ulrik Stervbo80
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Comment: C: OT: question about plots, general R, really...
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written 12.9 years ago by Ulrik Stervbo80
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Comment: C: OT: question about plots, general R, really...
... I can't remember syntax exactly, but using the omi argument to par to set the top outer margin and then mtext, to set some margin text, works very well something like par(omi=c(0,0,0.1,0)) # omi is for inches, oma (usage oma=c(0,0,3,0)) is for lines mtext(label="Something") Maybe this link will he ...
written 12.9 years ago by Ulrik Stervbo80
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Newbie 'rflowcyt' question; problem loading facscan256.fcs
... Hi Seth, Hi Nolwenn, I installed the latest rflowcyt, and get a different error: > fcs.loc <- system.file("fcs", package = "rfcdmin") > file.location <- paste(fcs.loc, "facscan256.fcs", sep = "/") > FC.FCSRobj <- read.FCS(file.location, UseS3 = TRUE, MY.DEBUG = TRUE,fcs.type = NUL ...
survival infrastructure cancer hexbin prada rfcdmin rflowcyt written 13.0 years ago by Ulrik Stervbo80 • updated 13.0 years ago by Seth Falcon7.4k
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Comment: C: Newbie 'rflowcyt' question; problem loading facscan256.fcs
... Hi Seth, Hi Nolwenn I get the same signature as well: > library("digest") > dataFile <- system.file("fcs/facscan256.fcs", package="rfcdmin") > dataFile [1] "/usr/lib/R/library/rfcdmin/fcs/facscan256.fcs" > digest(dataFile, file=TRUE) [1] "bfc603037460c0023569159c7360be0c" I have not ...
written 13.0 years ago by Ulrik Stervbo80
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Comment: C: Newbie 'rflowcyt' question; problem loading facscan256.fcs
... Hi Nolwenn, Yes, it is the read.FCS that gievs errors. Here's what I've done after starting R: > library(rflowcyt) > library(Biobase) > fcs.loc <- system.file("fcs", package = "rfcdmin") > file.location <- paste(fcs.loc, "facscan256.fcs", sep = "/") > FC.FCSRobj <- read.FCS ...
written 13.0 years ago by Ulrik Stervbo80
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Newbie 'rflowcyt' question; problem loading facscan256.fcs
... Hi all, I am all new to R and rflowcyt; I've googled and searched looked through recent mailinglist archives, but to no avail... I am trying to load the facscan256.fcs, as described on page 5 (yes 5) of 'Using RFlowCyt' from 3 April, 2006. I am stuck with this error: Error in if (my.metadata.T ...
biobase rflowcyt written 13.0 years ago by Ulrik Stervbo80 • updated 13.0 years ago by Nolwenn LeMeur140

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