User: miyouduniu

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miyouduniu0
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Posts by miyouduniu

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SeqArray problem in seqVCF2GDS and convert back to vcf
... Hi, I am trying to convert some VCFs to GDS and convert them back, but had some errors. Could you please get me some suggestions? Thanks a lot! library(SeqArray) library(VariantAnnotation) ## both vcfs have 5 metadata columns vcf1 <- readVcf('sample1.vcf','hg38') vcf1 ...
seqarray written 5 months ago by miyouduniu0 • updated 5 months ago by zhengx30
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question about DESeq2: getVarianceStabilizedData
... Hi, I am using DESeq2 1.18 and had some problem with getVarianceStabilizedData. The CountDataSet was produced internally  >cds <- homemade.CountDataSet(project, "gene", feature.ids = "count") I can check its class: > class(cds) [1] "CountDataSet" attr(,"package") [1] "DESeq" It is ...
deseq2 software error written 11 months ago by miyouduniu0 • updated 11 months ago by Michael Love24k

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