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Posts by miyouduniu
... Hi, I am trying to convert some VCFs to GDS and convert them back, but had some errors. Could you please get me some suggestions? Thanks a lot! library(SeqArray) library(VariantAnnotation) ## both vcfs have 5 metadata columns vcf1 <- readVcf('sample1.vcf','hg38') vcf1 ...
... Hi, I am using DESeq2 1.18 and had some problem with getVarianceStabilizedData. The CountDataSet was produced internally >cds <- homemade.CountDataSet(project, "gene", feature.ids = "count") I can check its class: > class(cds)  "CountDataSet" attr(,"package")  "DESeq" It is ...
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