User: Cece

gravatar for Cece
Cece0
Reputation:
0
Status:
New User
Last seen:
1 month ago
Joined:
4 months, 1 week ago
Email:
c**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Cece

<prev • 2 results • page 1 of 1 • next >
0
votes
1
answer
142
views
1
answers
Comment: C: DESeq2 error with lfcshrink for interaction term
... So if I understand correctly, if my full design looks like this: ds <- DESeqDataSetFromMatrix(countData = mycounts, colData=merge2, design= ~ Age + Gender + Cov3 + Cov2 + Cov1 + Condition + Cov1:Condition + Cov2:Condition + Cov3:Condition) then I can test the e ...
written 4 months ago by Cece0
2
votes
1
answer
142
views
1
answer
DESeq2 error with lfcshrink for interaction term
... Hi All, 1.   I'm trying to use the code below to shrink the LFCs in my model but I keep generating an error. resLFCint <- lfcShrink(dds, res = res, name="Cov1.Conditioncase", type="apeglm")) using 'apeglm' for LFC shrinkage Error: !missing(coef) is not TRUE design ~ Age + Gender + Cov3 + Cov2 ...
deseq2 interaction term written 4 months ago by Cece0 • updated 4 months ago by Michael Love21k

Latest awards to Cece

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 134 users visited in the last hour