User: Louis Kok

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Louis Kok0
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Posts by Louis Kok

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Relationship between base mean and adjusted p-value?
... Hi. I was trying to understand how adjusted p-value is calculated. I observed that different base mean gives different adjusted p-value. I was wondering if base mean is used as a factor for FDR correction for deseq2? Thanks.  ...
deseq2 written 6 months ago by Louis Kok0 • updated 6 months ago by Michael Love23k
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Comment: C: Different p-value using input files with pairwise and multiple condition design
... Thanks Michael.  ...
written 7 months ago by Louis Kok0
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Different p-value using input files with pairwise and multiple condition design
... Hi,   I have run DE analysis using different input files. One is with multiple conditions and another one is just pairwise comparison between treatment and control. I found that the p-value is kind of different. The input files are as below: For multiple conditions, the input file is as below: ...
deseq2 written 7 months ago by Louis Kok0 • updated 7 months ago by Michael Love23k

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