User: Tash.

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Tash.0
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Posts by Tash.

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Comment: C: Visualise and remove batch effects in DESeq2
... If its alright to ask a follow up question (although this might be more appropriate for a different forum but i'll give it a try). You're mentioning you don't have a strong preference to include the samples with rRNA contamination, meaning that there probably isn't is any biological effect that can ...
written 7 weeks ago by Tash.0
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Comment: C: Visualise and remove batch effects in DESeq2
... Thank you Michael.  ...
written 8 weeks ago by Tash.0
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Visualise and remove batch effects in DESeq2
... Hi there,  I have 36 samples of which 23 (both cases and controls) of them turned out to have 60-70% rRNA contamination. The sequencing facility re-sequenced these 23 samples on more lanes  = more seq depth in the contaminated samples with the thought that the reads would after removal of rRNA sequ ...
rnaseq deseq2 written 8 weeks ago by Tash.0 • updated 8 weeks ago by Michael Love20k

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