User: guipagui

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Posts by guipagui

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Comment: C: Deseq2 Interaction Term to catch
... Thanks a lot, The test : res = results(dds, name="genotypeMU.conditionTrt") answer to question "Effect of treatment for the 2 genotypes" ? is right ? https://rpubs.com/ge600/deseq2 I don't see how make it with methode B ... ? it's possible ? ...
written 12 months ago by guipagui0
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Deseq2 Interaction Term to catch
... Hi, I read the documentation, vignette, tuto ... but i'm face an issue. Let's try : dds <- makeExampleDESeqDataSet(n=10000,m=12) dds$condition <- factor( c( rep("Ctrl",6), rep("Trt",6) ) ) dds$genotype <- factor(rep(rep(c("WT","MU"),each=3),2)) dds$genotype = relevel( dds$genotype, "WT" ...
deseq2 interaction term written 12 months ago by guipagui0

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