User: oussama.badad

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Posts by oussama.badad

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Comment: C: create.set on MEDIPS
... Hi Lukas yes indeed , first i installed the BSgenome R CMD INSTALL BSgenome.Oeuropaea.IOGC.v1_1.0.tar.gz * installing to library ‘/scratch/obadad/anaconda3/envs/medip/lib/R/library’ * installing *source* package ‘BSgenome.Oeuropaea.IOGC.v1’ ... ** R ** inst ** byte-compile and prepare package for ...
written 5 days ago by oussama.badad0
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create.set on MEDIPS
... Hi i am tying to import my bam files for MEDIP-seq analysis, using a custom BSgenome . my bam files are in "MEDIPS_BAMs" directory i am using the following command : > AKM-ANF_MeDIP = MEDIPS.createSet(file = "MEDIPS_BAMs/AKM-ANF.sorted.bam", BSgenome = BSgenome.Oeuropaea.IOGC.v1, extend = 300 ...
medips createset written 6 days ago by oussama.badad0 • updated 6 days ago by Lukas Chavez470
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error importing bam file for MEDIPS analysis
... Hi i am tying to import my bam files for MEDIP-seq analysis. my bam files are in "MEDIPS_BAMs" directory i am using the following command : > AKM-ANF_MeDIP = MEDIPS.createSet(file = "MEDIPS_BAMs/AKM-ANF.sorted.bam", BSgenome = BSgenome.Oeuropaea.IOGC.v1, extend = 300, shift = 0, uniq = TRUE, ...
medips bamfile written 12 days ago by oussama.badad0
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BSgenome package building
... Hi all, i am trying to build a BSgenome package for olea europea for some Medipseq analysis , i run the first command library(BSgenome) > forgeBSgenomeDataPkg("path/to/my/seed") it working and creating the single_sequences.2bit the when i run the second command R CMD build /scratch/obadad/BS ...
bsgenome written 5 weeks ago by oussama.badad0 • updated 5 weeks ago by James W. MacDonald48k

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