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Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago
mohammedtoufiq91
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Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago
mohammedtoufiq91
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Comment: Question on constructing design matrix and defining contrasts for analysis
10 months ago
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Comment: Question on constructing design matrix and defining contrasts for analysis
10 months ago
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Comment: Question on constructing design matrix and defining contrasts for analysis
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
mohammedtoufiq91
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Comment: Question about setting threshold using filtering by expression on genes in edgeR
11 months ago
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Comment:
Comment: Question about setting threshold using filtering by expression on genes in edgeR
11 months ago
mohammedtoufiq91
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Comment:
Comment: Question about setting threshold using filtering by expression on genes in edgeR
11 months ago
mohammedtoufiq91
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Comment: Question about filter by expression (filterByExpr) in edgeR
12 months ago
mohammedtoufiq91
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Comment: Question about filter by expression (filterByExpr) in edgeR
12 months ago
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Comment: Question about filter by expression (filterByExpr) in edgeR
12 months ago
mohammedtoufiq91
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Comment: Question about filter by expression (filterByExpr) in edgeR
13 months ago
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Comment: Question about filter by expression (filterByExpr) in edgeR
13 months ago
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Comment: Question about avereps function of limma
13 months ago
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Comment: Error in running Dispersion estimation analysis in EdgeR
14 months ago
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Comment: Error in running Dispersion estimation analysis in EdgeR
14 months ago
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Comment: Error in running Dispersion estimation analysis in EdgeR
14 months ago
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Comment: Error in running Dispersion estimation analysis in EdgeR
14 months ago
mohammedtoufiq91
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Comment: Error in running Dispersion estimation analysis in EdgeR
14 months ago
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Comment: Which input file is used for DGEList in EgdeR?
14 months ago
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Comment: Which input file is used for DGEList in EgdeR?
14 months ago
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Comment: How to identify top most variable genes from log2 normalized data?
16 months ago
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Comment: How to identify top most variable genes from log2 normalized data?
16 months ago
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978
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Comment: Question about making Contrasts for comparisons and assignment of values
16 months ago
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978
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Comment: Question about making Contrasts for comparisons and assignment of values
16 months ago
mohammedtoufiq91
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978
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Comment: Question about making Contrasts for comparisons and assignment of values
16 months ago
mohammedtoufiq91
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Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
16 months ago
mohammedtoufiq91
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Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
16 months ago
mohammedtoufiq91
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Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
16 months ago
mohammedtoufiq91
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Comment: Extracting specific comparisons after fitting model in EdgeR
16 months ago
mohammedtoufiq91
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777
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Comment:
Comment: Does negative corfit$consensus cause issues while fitting a model in limma
16 months ago
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Comment: Question on performing filtering by gene expression on a normalized matrix in li
16 months ago
mohammedtoufiq91
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Comment: Error while reading rsem files in tximport
16 months ago
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Comment: Error while reading rsem files in tximport
16 months ago
mohammedtoufiq91
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3.4k
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Comment: Possibility of using TPM or FPKM values in edgeR for differential expression ana
17 months ago
mohammedtoufiq91
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3.4k
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Comment:
Comment: Possibility of using TPM or FPKM values in edgeR for differential expression ana
17 months ago
mohammedtoufiq91
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824
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Comment:
Comment: How to process and analyze Total RNA-Seq data?
17 months ago
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Comment: Question on performing filtering by gene expression on a normalized matrix in li
19 months ago
mohammedtoufiq91
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1.9k
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Comment:
Comment: Question on performing filtering by gene expression on a normalized matrix in li
19 months ago
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Comment: Question on performing filtering by gene expression on a normalized matrix in li
19 months ago
mohammedtoufiq91
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1.5k
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Comment: Question on RNA-Seq single sample data analysis in EdgeR
23 months ago
mohammedtoufiq91
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1.4k
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Comment:
Comment: How to best visualize multi-level transcriptomics experiment data?
23 months ago
mohammedtoufiq91
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Comment:
Comment: How to best visualize multi-level transcriptomics experiment data?
23 months ago
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Comment:
Comment: How to best visualize multi-level transcriptomics experiment data?
23 months ago
mohammedtoufiq91
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1.3k
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Comment:
Comment: How to make design matrices or compare contrast in limma
2.0 years ago
mohammedtoufiq91
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1.3k
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Comment:
Comment: How to make design matrices or compare contrast in limma
2.0 years ago
mohammedtoufiq91
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2.0k
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Comment:
Comment: Unlog transformed data in DESeq2
2.4 years ago
mohammedtoufiq91
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2.3k
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Comment:
Comment: Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lu
2.4 years ago
mohammedtoufiq91
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2.3k
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Comment:
Comment: Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lu
2.4 years ago
mohammedtoufiq91
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3.2k
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Comment:
C: Handle missing values in the z-score matrix while plotting heatmap in the Comple
4.6 years ago
mohammedtoufiq91
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