User: Krys Kelly

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Krys Kelly270
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Posts by Krys Kelly

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Two Computational Biology / Bioinformatics Positions, University of Cambridge, UK
... Two Research Associates Computational biology / bioinformatics and small RNAs Department of Plant Sciences, University of Cambridge, UK Salary: ?25,134-?32,796 (rising to ?25,888-?33,780 on 1 May 2008) Limit of tenure: funds are available for two years in the first instance Professor Baulcombe? ...
sequencing written 11.7 years ago by Krys Kelly270
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Comment: C: beadarray package: problem with object made by createBeadSummaryData
... Hi Matt So should I revert to R 2.5.1 or is there a way to access beadarray 1.7.2? Thanks Krys -----Original Message----- From: Matt Ritchie [mailto:Matt.Ritchie@cancer.org.uk] Sent: 12 November 2007 19:01 To: Krys Kelly; bioconductor at stat.math.ethz.ch Subject: Re: [BioC] beadarray package: ...
written 12.1 years ago by Krys Kelly270
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beadarray package: problem with object made by createBeadSummaryData
... Hello Using R 2.5.1, I have read in and explored the bead level data from 5 Illumina mouse-6 slides which have 6 arrays per slide and 2 images per array. I have also created and saved bead summary data trying out a few options for the background correction. When I was using R 2.5.1 and the corres ...
beadarray written 12.1 years ago by Krys Kelly270 • updated 12.1 years ago by Matt Ritchie460
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Comment: C: Using beadarray for bead level data, what is the ProbeID with 1000's of beads?
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071108/ 5e8d48b7/attachment.pl ...
written 12.1 years ago by Krys Kelly270
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Using beadarray for bead level data, what is the ProbeID with 1000's of beads?
... Hello I have data from 5 Illumina mouse 6 beadarray slides. I have read in the bead level data using the beadarray package and used tapply to count the number of beads per probe. As an example, the output below is the summary and the top 10 counts for the first strip of the first array of my firs ...
probe beadarray written 12.1 years ago by Krys Kelly270 • updated 12.1 years ago by Wei Shi3.2k
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Comment: C: Installing beadarray
... Dear Joern, Sean I did > biocLite("beadarray", dependencies=TRUE) As suggested by Joern, and lots of things got installed. But then I got: > library(beadarray) Loading required package: geneplotter Loading required package: annotate Loading required package: AnnotationDbi Error: package ' ...
written 12.1 years ago by Krys Kelly270
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Installing beadarray
... Hello I have just installed R 2.6.0. To save space, I usually install packages individually rather than using biocLite(). I installed beadarray and then, when I typed library(beadarray), I got: Error: package 'geneplotter' could not be loaded In addition: Warning message: In library(pkg, characte ...
annotate geneplotter beadarray annotationdbi written 12.1 years ago by Krys Kelly270 • updated 12.1 years ago by Sean Davis21k
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beadarray - bead level image plots
... I was wondering what uncoloured rectangles signify in the image plots. Thanks Krys Dr Krystyna A Kelly (Krys) Department of Pathology University of Cambridge, Tennis Court Road, Cambridge CB2 1QP Tel: 01223 333331 and MRC Biostatistics Unit Institute of Public Health, Robinson Way, Cambridge ...
written 12.2 years ago by Krys Kelly270 • updated 12.2 years ago by Matt Ritchie460
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beadarray - combing
... I have been using beadarray to explore 5 Illumina mouse 6 bead chips (i.e. 30 arrays). I would now like to summarise the data using createBeadSummaryData. As the documentation says, this is memory intensive and I do not believe it will be possible to do with with a 32-bit version of R. I am looki ...
geneplotter affy affyio beadarray quantsmooth beadarraysnp written 12.4 years ago by Krys Kelly270 • updated 12.3 years ago by Mark Dunning320
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beadarray package: problem with bead level data
... Dear Jose As you say, the jpegs are only 8 bit. Also, Matt Ritchie told me the tiffs are 80MB and my files are only 880KB. I've talked to the people who did the scanning and the tiffs were deleted because they are so big. However, they are rescanning them for me, so I should have the tiffs next ...
go beadarray written 12.4 years ago by Krys Kelly270

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