User: saripalligautam86

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Posts by saripalligautam86

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Coupling set error in MEDIPS
... Dear All,   I am tring to analyse my MeDIP-Seq data in wheat using MEDIPS package. For this purpose, as mentioned in my earlier post, I created .2bit file from .fasta whole genome sequence file and then I created a forge bsgenome package and then build the package using devtools in R. I created me ...
medips coupling set error cpg density written 10 months ago by saripalligautam8610
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CouplingSet error in MeDIPS
... Dear All,   I am tring to analyse my MeDIP-Seq data in wheat using MEDIPS package. For this purpose, as mentioned in my earlier post, I created .2bit file from .fasta whole genome sequence file and then I created a forge bsgenome package and then build the package using devtools in R. I created me ...
medips coupling set error written 10 months ago by saripalligautam8610
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converting a fasta file to .2bit format
... Dear All,   I am using biostrings and rtracklayer to convert a wheat reference sequence which is a fasta file to a .2bit file in order to use it for BS forgenomepackage. I first used biostrings to get a DNAStringSet, the output is shown below: > Biostrings::readDNAStringSet("wheatreference.fas ...
biostrings rtracklayer written 10 months ago by saripalligautam8610 • updated 10 months ago by Hervé Pagès ♦♦ 14k

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