User: lm795

gravatar for lm795
lm7950
Reputation:
0
Status:
New User
Location:
United Kingdom
Last seen:
6 hours ago
Joined:
1 week ago
Email:
l****@mrc-tox.cam.ac.uk
I am a programme leader at the MRC Toxicology Unit. The aim of my research programme is understanding the cellular and molecular mechanisms that mitochondria use, as signaling hubs, for coping with toxic insults.

Posts by lm795

<prev • 7 results • page 1 of 1 • next >
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
... Ok, I have Dropboxed gene_ids, with the header as a csv file here. Thanks again! ...
written 4 days ago by lm7950
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
...   Hi again, I have troubleshooted and got it to work with Mike's example. Here is my code: # Project 01: Annotate Drosophila gene IDs with human IDs from BioMart # Loading the required libraries library(tidyverse) library(biomaRt) gene_list <- read_csv("/Users/miguel/Dropbox/RStudio/Martins_ ...
written 5 days ago by lm7950
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
... Thanks James, I will troubleshoot my code and when I do so post an update here. I am unfamiliar on how to post properly formatted code in this platform, is there a tutorial available? ...
written 5 days ago by lm7950
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
... Thanks James, I have tried getBM but will dive into getLDS soon. As you see from above I am still having a few issues with getBM ...
written 6 days ago by lm7950
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
...   Hi again, I used the getBM function using the following code: library(tidyverse) library(dplyr) gene_list <- read_csv("/Users/miguel/Dropbox/RStudio/Martins_Sanz/data/Thermal_Stress_GSA.csv") gene_ids <- gene_list %>%   select (Gene_ID) # ****Note that there is a bug and if biomaRt is ...
written 6 days ago by lm7950
0
votes
2
answers
135
views
2
answers
Comment: C: Getting R to talk to BioMart using biomaRt
... Many thanks for the very useful explanation Mike, I will give it a go with my table. I will come back if I encounter problems. I am a bit of a rookie ...
written 6 days ago by lm7950
2
votes
2
answers
135
views
2
answers
Getting R to talk to BioMart using biomaRt
... Greetings! I am new to this forum and posted a question recently to the RStudio community. A kind soul, Mara Averick pointed me to this forum. My objective is to annotate a table of gene expression data "say for organism A" with information on orthologues from "organism B", as an additional column ...
biomart written 7 days ago by lm7950 • updated 6 days ago by James W. MacDonald48k

Latest awards to lm795

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 449 users visited in the last hour