User: santamariagianluca

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Posts by santamariagianluca

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Deseq2 normalization steps
... Hi Michael, I got some question about the tutorial of DESeq2 and I was wondering if you could help me in: 1) normalized metric you use in Deseq is not referring to RPKM or TPKM, but: "counts divided by sample-specific size factors determined by median ratio of gene counts relative to geometric m ...
normalization deseq2 written 5 weeks ago by santamariagianluca0 • updated 5 weeks ago by James W. MacDonald50k
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DeSeq2 batch effect
... Hi Michael, I'm trying to remove the batch effect from my samples doing like this: APPOGGIO: Well Barcode day bioRep RAcond TNx techRep ATTACT B4 ATTACT D5 n1 RA NposTneg 1 TTATTG D4 TTATTG D5 n2 RA NposTneg 1 ATTCTA B5 ATTCTA D5 n1 RA ...
deseq2 written 8 months ago by santamariagianluca0 • updated 8 months ago by Michael Love24k

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