User: santamariagianluca
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Posts by santamariagianluca
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... Hi Michael,
I got some question about the tutorial of DESeq2 and I was wondering if you could help me in:
1) normalized metric you use in Deseq is not referring to RPKM or TPKM, but: "counts divided by sample-specific size factors determined by median ratio of gene counts relative to geometric m ...
written 5 weeks ago by
santamariagianluca • 0
• updated
5 weeks ago by
James W. MacDonald ♦ 50k
2
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... Hi Michael,
I'm trying to remove the batch effect from my samples doing like this:
APPOGGIO:
Well Barcode day bioRep RAcond TNx techRep
ATTACT B4 ATTACT D5 n1 RA NposTneg 1
TTATTG D4 TTATTG D5 n2 RA NposTneg 1
ATTCTA B5 ATTCTA D5 n1 RA ...
written 8 months ago by
santamariagianluca • 0
• updated
8 months ago by
Michael Love ♦ 24k
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