User: mcalgaro93

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mcalgaro930
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Posts by mcalgaro93

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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
... Hi everyone, I'm doing some comparisons between models and for each of them I'm going to compute Akaike information Criterion (AIC) and Bayesian Information Criterion (BIC). When it comes to MAST hurdle model (https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0844-5 ... under the c ...
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Comment: C: nbinomLRT function all cores usage
... Thank you very much Davide, you solved my problem. :) ...
written 11 months ago by mcalgaro930
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Comment: C: nbinomLRT function all cores usage
... I'm confused too, because that's the reason why I asked the question. I add a link to a gif, just to show you :) https://drive.google.com/file/d/1VCTiow9GUg-Fiu2xIQ-5UDCJYNMfH5Ek/view?usp=sharing Now i'll try to do a check in another PC for checking if the issue is in the server. ...
written 11 months ago by mcalgaro930
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nbinomLRT function all cores usage
... Hi, I have a question about the cores usage during DESeq2 differential expression pipeline. The issue happens when I launch nbinomLRT function.  The object i give to the function is:   > ddsDisp class: DESeqDataSet dim: 843 100 metadata(1): version assays(2): counts mu rownames(843): OTU_2 OT ...
deseq2 biocparallel sample size nbinomlrt written 11 months ago by mcalgaro930 • updated 11 months ago by davide risso830

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