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Comment: Comment: FilterByExpr low counts with small sample size
13 hours ago • updated 2 hours ago Gordon Smyth 50k
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1.2k
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Comment: Comment: Batch correction and repeated measures
13 hours ago Gordon Smyth 50k
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137
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Comment: Comment: Methylation Analysis experiment design using Limma
15 hours ago Gordon Smyth 50k
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137
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Answer: Answer: Methylation Analysis experiment design using Limma
1 day ago Gordon Smyth 50k
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769
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
1 day ago Gordon Smyth 50k
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769
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
1 day ago Gordon Smyth 50k
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98
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Answer: Answer: Differentially expressed genes in monocle pseudotime
2 days ago Gordon Smyth 50k
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251
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Answer: Answer: permutation test in edgeR
3 days ago Gordon Smyth 50k
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292
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Answer: Answer: Why is my gene not significantly differentially expressed?
3 days ago Gordon Smyth 50k
1
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769
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 days ago • updated 3 days ago Gordon Smyth 50k
2
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1
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769
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
6 days ago Gordon Smyth 50k
0
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0
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136
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
12 days ago Gordon Smyth 50k
1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
12 days ago Gordon Smyth 50k
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
12 days ago Gordon Smyth 50k
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0
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210
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Comment: Comment: Regressing out batch effects
13 days ago Gordon Smyth 50k
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
13 days ago Gordon Smyth 50k
0
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
13 days ago Gordon Smyth 50k
0
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1
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397
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
14 days ago • updated 13 days ago Gordon Smyth 50k
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
14 days ago Gordon Smyth 50k
1
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1
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397
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
14 days ago • updated 13 days ago Gordon Smyth 50k
0
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1
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137
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Answer: Answer: edgeR analysis: glm functions and offset matrix
15 days ago Gordon Smyth 50k
1
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0
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
2
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago • updated 14 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
15 days ago Gordon Smyth 50k
0
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1
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380
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
16 days ago Gordon Smyth 50k
0
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1
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380
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
16 days ago Gordon Smyth 50k
1
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0
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
18 days ago Gordon Smyth 50k
1
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2
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
18 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
18 days ago Gordon Smyth 50k
0
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0
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323
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Comment: Comment: Differing results from plotMDS and PCAtools
19 days ago Gordon Smyth 50k
3
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
19 days ago • updated 16 days ago Gordon Smyth 50k
1
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0
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323
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Comment: Comment: Differing results from plotMDS and PCAtools
19 days ago Gordon Smyth 50k
0
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0
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301
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
19 days ago Gordon Smyth 50k
2
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1
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1.7k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
19 days ago • updated 12 days ago Gordon Smyth 50k
0
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1
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301
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
20 days ago Gordon Smyth 50k
2
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1
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323
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Answer: Answer: Differing results from plotMDS and PCAtools
20 days ago • updated 18 days ago Gordon Smyth 50k
2
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0
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663
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
21 days ago Gordon Smyth 50k
1
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0
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471
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Answer: Answer: Microarray Limma Model fitting and DEG
21 days ago Gordon Smyth 50k
1
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0
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407
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Comment: Comment: DEG Filtering
21 days ago Gordon Smyth 50k
0
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1
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471
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Answer: Answer: Microarray Limma Model fitting and DEG
22 days ago Gordon Smyth 50k
0
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1
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773
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Comment: Comment: limma models out of memory issue on Slurm HPC
23 days ago Gordon Smyth 50k
2
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1
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773
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Answer: Answer: limma models out of memory issue on Slurm HPC
23 days ago • updated 14 days ago Gordon Smyth 50k
2
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1
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407
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Comment: Comment: Batch Effect Correction, Gene Filtering
26 days ago Gordon Smyth 50k
1
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0
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407
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Comment: Comment: Batch Effect Correction, Gene Filtering
26 days ago Gordon Smyth 50k
0
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0
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203
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
27 days ago Gordon Smyth 50k
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