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Answer: Answer: RNAseq:Technical replicates from different batches
6 hours ago Gordon Smyth 50k
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76
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Comment: Comment: Finding DEGs by using edgeR
20 hours ago Gordon Smyth 50k
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1
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189
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Answer: Answer: FilterByExpr low counts with small sample size
21 hours ago • updated 20 hours ago Gordon Smyth 50k
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55
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Answer: Answer: How to make DGEList and design matrix by edgeR package
21 hours ago Gordon Smyth 50k
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76
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Answer: Answer: Finding DEGs by using edgeR
21 hours ago Gordon Smyth 50k
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67
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Answer: Answer: Log-cpm values from limma
21 hours ago Gordon Smyth 50k
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1
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189
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Comment: Comment: FilterByExpr low counts with small sample size
2 days ago • updated 1 day ago Gordon Smyth 50k
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1.2k
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Comment: Comment: Batch correction and repeated measures
2 days ago Gordon Smyth 50k
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158
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Comment: Comment: Methylation Analysis experiment design using Limma
2 days ago Gordon Smyth 50k
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158
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Answer: Answer: Methylation Analysis experiment design using Limma
2 days ago Gordon Smyth 50k
1
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1
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806
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
3 days ago • updated 2 days ago Gordon Smyth 50k
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806
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
3 days ago Gordon Smyth 50k
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116
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Answer: Answer: Differentially expressed genes in monocle pseudotime
3 days ago Gordon Smyth 50k
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263
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Answer: Answer: permutation test in edgeR
5 days ago • updated 4 days ago Gordon Smyth 50k
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309
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Answer: Answer: Why is my gene not significantly differentially expressed?
5 days ago • updated 4 days ago Gordon Smyth 50k
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806
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
6 days ago • updated 5 days ago Gordon Smyth 50k
2
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1
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806
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
7 days ago Gordon Smyth 50k
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140
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
13 days ago Gordon Smyth 50k
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
14 days ago • updated 13 days ago Gordon Smyth 50k
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0
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
14 days ago • updated 13 days ago Gordon Smyth 50k
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215
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Comment: Comment: Regressing out batch effects
14 days ago Gordon Smyth 50k
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
14 days ago Gordon Smyth 50k
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
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1
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399
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
15 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago • updated 15 days ago Gordon Smyth 50k
1
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1
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399
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
16 days ago • updated 15 days ago Gordon Smyth 50k
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1
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141
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Answer: Answer: edgeR analysis: glm functions and offset matrix
16 days ago Gordon Smyth 50k
1
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0
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
0
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1
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790
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Comment: Comment: limma models out of memory issue on Slurm HPC
17 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
17 days ago Gordon Smyth 50k
0
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1
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386
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
17 days ago Gordon Smyth 50k
0
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1
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386
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
18 days ago • updated 17 days ago Gordon Smyth 50k
1
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0
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
20 days ago Gordon Smyth 50k
1
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2
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
20 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
20 days ago Gordon Smyth 50k
0
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0
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327
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Comment: Comment: Differing results from plotMDS and PCAtools
20 days ago Gordon Smyth 50k
3
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
21 days ago • updated 17 days ago Gordon Smyth 50k
1
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0
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327
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Comment: Comment: Differing results from plotMDS and PCAtools
21 days ago • updated 20 days ago Gordon Smyth 50k
0
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0
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304
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
21 days ago Gordon Smyth 50k
2
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1
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1.7k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
21 days ago • updated 13 days ago Gordon Smyth 50k
0
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1
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304
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
21 days ago Gordon Smyth 50k
2
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1
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327
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Answer: Answer: Differing results from plotMDS and PCAtools
21 days ago • updated 20 days ago Gordon Smyth 50k
2
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0
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668
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
23 days ago Gordon Smyth 50k
1
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0
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475
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Answer: Answer: Microarray Limma Model fitting and DEG
23 days ago Gordon Smyth 50k
1
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0
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415
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Comment: Comment: DEG Filtering
23 days ago Gordon Smyth 50k
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