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Comment: Comment: FilterByExpr low counts with small sample size
1 day ago • updated 20 hours ago Gordon Smyth 50k
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1.2k
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Comment: Comment: Batch correction and repeated measures
1 day ago Gordon Smyth 50k
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0
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148
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Comment: Comment: Methylation Analysis experiment design using Limma
1 day ago Gordon Smyth 50k
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1
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148
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Answer: Answer: Methylation Analysis experiment design using Limma
1 day ago Gordon Smyth 50k
1
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1
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792
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
2 days ago • updated 1 day ago Gordon Smyth 50k
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1
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792
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
2 days ago Gordon Smyth 50k
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107
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Answer: Answer: Differentially expressed genes in monocle pseudotime
2 days ago Gordon Smyth 50k
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0
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257
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Answer: Answer: permutation test in edgeR
4 days ago • updated 3 days ago Gordon Smyth 50k
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302
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Answer: Answer: Why is my gene not significantly differentially expressed?
4 days ago • updated 3 days ago Gordon Smyth 50k
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2
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792
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
5 days ago • updated 4 days ago Gordon Smyth 50k
2
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1
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792
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
6 days ago Gordon Smyth 50k
0
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139
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
13 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
13 days ago • updated 12 days ago Gordon Smyth 50k
1
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0
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
13 days ago • updated 12 days ago Gordon Smyth 50k
0
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0
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214
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Comment: Comment: Regressing out batch effects
13 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
13 days ago Gordon Smyth 50k
0
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0
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
14 days ago Gordon Smyth 50k
0
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1
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398
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
15 days ago • updated 14 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
1
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1
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398
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
15 days ago • updated 14 days ago Gordon Smyth 50k
0
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1
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139
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Answer: Answer: edgeR analysis: glm functions and offset matrix
15 days ago Gordon Smyth 50k
1
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0
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
2
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
15 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
16 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
16 days ago Gordon Smyth 50k
0
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1
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385
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
16 days ago Gordon Smyth 50k
0
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1
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385
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
17 days ago • updated 16 days ago Gordon Smyth 50k
1
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0
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
19 days ago Gordon Smyth 50k
1
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2
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
19 days ago Gordon Smyth 50k
1
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
19 days ago Gordon Smyth 50k
0
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0
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325
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Comment: Comment: Differing results from plotMDS and PCAtools
20 days ago Gordon Smyth 50k
3
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1
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1.7k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
20 days ago • updated 16 days ago Gordon Smyth 50k
1
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0
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325
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Comment: Comment: Differing results from plotMDS and PCAtools
20 days ago Gordon Smyth 50k
0
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0
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302
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
20 days ago Gordon Smyth 50k
2
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1
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1.7k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
20 days ago • updated 12 days ago Gordon Smyth 50k
0
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1
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302
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
20 days ago Gordon Smyth 50k
2
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1
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325
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Answer: Answer: Differing results from plotMDS and PCAtools
20 days ago • updated 19 days ago Gordon Smyth 50k
2
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0
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664
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
22 days ago Gordon Smyth 50k
1
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0
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473
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Answer: Answer: Microarray Limma Model fitting and DEG
22 days ago Gordon Smyth 50k
1
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0
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414
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Comment: Comment: DEG Filtering
22 days ago Gordon Smyth 50k
0
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1
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473
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Answer: Answer: Microarray Limma Model fitting and DEG
23 days ago Gordon Smyth 50k
0
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1
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778
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Comment: Comment: limma models out of memory issue on Slurm HPC
23 days ago Gordon Smyth 50k
2
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1
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778
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Answer: Answer: limma models out of memory issue on Slurm HPC
24 days ago • updated 15 days ago Gordon Smyth 50k
2
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1
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410
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Comment: Comment: Batch Effect Correction, Gene Filtering
27 days ago Gordon Smyth 50k
1
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0
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410
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Comment: Comment: Batch Effect Correction, Gene Filtering
27 days ago Gordon Smyth 50k
0
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0
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204
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
28 days ago Gordon Smyth 50k
5,067 results • Page 1 of 102
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