User: Klaus-Peter Pleissner

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Posts by Klaus-Peter Pleissner

<prev • 7 results • page 1 of 1 • next >
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maSigPro time problem (2.trial)
... Hello, we would like to analyze our time course data using maSigPro. The structure of edesign is following: > str(edesign.rna) int [1:16, 1:3] 30 30 30 30 45 45 45 45 60 60 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:16] "H030A_normalized_r1_ch1" "H030A_normalized_r2_ch1" "H030A_normali ...
masigpro written 10.3 years ago by Klaus-Peter Pleissner70
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GOstats-compatible annotation package for Helicobacter pylori 26995
... Hi BioC, in the BioC-mailing list I have read a lot about annotation packages for GOstats or topGO. My question is following: 1. Is there already a user-defined GOstats-compatible annotation package for Helicobacter pylori 26995 to perform gene enrichment analysis using , for instance, hyperGtest ...
annotation annbuilder gostats topgo written 10.9 years ago by Klaus-Peter Pleissner70 • updated 10.9 years ago by Marc Carlson7.2k
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cellHTS: help for NPI normalization
... Dear all, using cellHTS (not cellHTS2) we want to perform a "NPI-normalization" with positive and negative control wells. According twoway. pdf vignette we define control wells as : posCtr <- list(act= "(?i)^Mock$", inh = "(?i)^NP$") negCtr <- "(?i)^Allstars$" and normalize by x <- n ...
normalization cellhts written 11.4 years ago by Klaus-Peter Pleissner70 • updated 11.4 years ago by Florian Hahne540
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EBImage installation error
... Hello I have downloaded gtk-dev-2.10.11-win32-1.exe and installed GTK under C:\GTK. Then I installed ImageMagick-6.3.8-Q16 The path variable is : PATH=C:\GTK\bin;C:\GTK\lib;d:\programme\imagemagick-6.3.8-q16;C:\WINDO WS\system32 Then I installed EBImage_2.2.0.zip within R-GUI using Packages - ...
cdf ebimage written 11.6 years ago by Klaus-Peter Pleissner70
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installation problem with Windows binary cellHTS_1.6.0.zip
... Hi, I have trouble with the installation of Windows binary cellHTS_1.6.0.zip Following error occurs: > library(cellHTS) Loading required package: prada Error in loadNamespace(i[[1]], c(lib.loc, .libPaths())) : there is no package called 'rrcov' Error: package 'prada' could not be lo ...
prada written 12.1 years ago by Klaus-Peter Pleissner70 • updated 12.1 years ago by Sean Davis21k
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error in annotate-function of cellHTS package (2. trial)
... An embedded and charset-unspecified text was scrubbed... Name: cellHTS_for_CIA_processing.R Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20060710/ 1717f71f/attachment.pl ...
written 13.2 years ago by Klaus-Peter Pleissner70
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