User: oakhamwolf

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oakhamwolf0
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Posts by oakhamwolf

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EdgeR applied to peptide screen: help!
... Dear all, I'm trying to apply edgeR to the analysis of a peptide screen and I have a few questions I hope I can get help with. Background We are following a similar protocol to Matochko et al (PMID:24217917) as we are trying to identify "fast-grower" sequences (i.e. those that appear to prolifera ...
edger calcnormfactors library size factor peptide screen written 13 days ago by oakhamwolf0 • updated 12 days ago by Gordon Smyth35k
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Answer: A: EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
... Many thanks for the clarification and the fast response. ...
written 19 days ago by oakhamwolf0
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
... Dear all, I'm working through the edgeR user guide and would like to understand the reasoning behind using glmLRT() over glmQFTest() to detect DE genes, specifically within the oral carcinoma Case Study (p40 onward). I see from the user guide and also here and other sources that for cases where the ...

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