User: konradgru

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konradgru0
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Posts by konradgru

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Comment: C: DeSeq2 extract internal expression values
... Thanks Michael. Time to update my DESeq2 package;-) I actually want to accomplish the opposite. From what I understand the shrinked LFC is more accurate as it e.g. reduces inflation by random noise. So I would rather extract the expression values that fit to that shrinked LFC, than get the unshrunk ...
written 4 months ago by konradgru0
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DeSeq2 extract internal expression values
... Hello, I happily use DESeq2 (DESeq2_1.10.1) in R for several years now. The log2FoldChanges (lfc) returned by the results function are estimates after estimateSizeFactors and estimateDispersions (called by DESeq function). For cluster analysis we usually take rlog transformed data as recommended in ...
deseq2 written 4 months ago by konradgru0 • updated 4 months ago by Michael Love22k

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