User: pw349

gravatar for pw349
pw3490
Reputation:
0
Status:
New User
Location:
Last seen:
5 hours ago
Joined:
3 weeks, 6 days ago
Email:
p****@exeter.ac.uk

Posts by pw349

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answers
77
views
1
answers
Comment: C: Another Matrix is not full rank question, multi-factor design issues
... Thanks James and Michael! ...
written 1 day ago by pw3490
0
votes
1
answers
77
views
1
answers
Comment: C: Another Matrix is not full rank question, multi-factor design issues
... Hi, Can I just bump this again to see if I understood your answer correctly, please? Thank you James ...
written 6 days ago by pw3490
0
votes
1
answers
77
views
1
answers
Comment: C: Another Matrix is not full rank question, multi-factor design issues
... Thanks James for the feedback. Could I just run everything using just the treatment column then? i.e dds2 <- DESeqDataSetFromMatrix(countData = countdata, colData = coldata, design = ~treatment) dds2 <- DESeq(dds2) rld_dds2 <- rlog(dds2, blind = FALSE) results <-DESeq(dds2) DESeq2_resu ...
written 20 days ago by pw3490
0
votes
1
answers
77
views
1
answers
Comment: C: Another Matrix is not full rank question, multi-factor design issues
... FYI, session info is below: > sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-redhat-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIM ...
written 21 days ago by pw3490
0
votes
1
answer
77
views
1
answer
Another Matrix is not full rank question, multi-factor design issues
... Hello, Thank you in advance for your help with this. I have been trying very hard to work this out and have tried to follow the vignette and looked through Q&As on this site, but to no avail. My experimental outline: I pretreated cells to either "control" or "RecLG" for 3 days and then on the ...
deseq2 multiple factor design model matrix not full rank written 21 days ago by pw3490 • updated 21 days ago by James W. MacDonald48k

Latest awards to pw349

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 365 users visited in the last hour