User: Walter Jessen

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Posts by Walter Jessen

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Comment: C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found
... Thank you Guido! I built and installed version 10 of the custom CDF manually, but the problem here apparently stemmed from the rma function in the latest version of BioC. Reverting to R 2.6.x and BioC v2.1 (which used an older version of the script) fixed the issue, and I was able to rma the affybat ...
written 10 months ago by Walter Jessen0
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Comment: C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found
... I changed the argument from Mm430_Mm_ENTREZG to mm430mmentrezg and removed the line to rename the slot that contains the CDF name, but still get error: Error in get(cdfname, envir = as.environment(paste("package:", cdfname, : object 'mm430mmentrezgcdf' not found ...
written 10 months ago by Walter Jessen0
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Error in get(cdfname, object 'mm430mmentrezgcdf' not found
... I have some old MOE430_2 CEL files that were previously analyzed using a custom CDF (Brainarray mm430mmentrezgcdf_10.0.0) and I'm trying to duplicate the analysis. I've built and installed the package mm430mmentrezgcdf_10.0.0.tar.gz but when I try to rma the affybatch object, I get the error: Erro ...
cdf affy rma written 10 months ago by Walter Jessen0 • updated 10 months ago by Guido Hooiveld2.5k

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