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User: sherajilir

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sherajilir0
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Posts by sherajilir

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Comment: C: Different annotation obtained from hgu133a2.db and affymetrix annotation release
... Some functions just get outdated and replaced by better and more "universal" ones. Its really tough sometimes to keep up with all the changes happening, especially towards the end of the year! Select is awesome though ...
written 11 weeks ago by sherajilir0
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Answer: A: logfold shrinkage DESeq2
... Thank you Michael for the quick reply. Actually the shrinked lfc MA plot is something like this https://www.dropbox.com/s/hun8s44twzxw3g2/Shrinked%20lfc%20plot.tiff?dl=0 But i think i got the answer.   ...
written 12 weeks ago by sherajilir0
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logfold shrinkage DESeq2
... Hi everyone, I Did DESseq2 differential expression analysis for 180 samples from TCGA using HTSEQ raw counts. After following all the steps and normalizing for two factors i got the expressed data with lof2FC, pval and padj. Then i did log-fold shrinkage using the apeglm package and im getting diff ...
deseq2 written 12 weeks ago by sherajilir0

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