User: Ross Lazarus

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Ross Lazarus90
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8 years, 2 months ago
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11 years, 2 months ago
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r***********@channing.harvard.edu

Posts by Ross Lazarus

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Comment: C: rma error on an affyBatch from ArrayExpress?
... Ah. Thanks Martin. Yes, that fixed it. Odd as I'd just compiled and installed this R instance to replace R 2.7.0, and installed all the BioC packages on Monday, so not sure how all the old packages ended up there... I think I used getBioC instead of biocLite but update.packages found a whole bunch ...
written 8.2 years ago by Ross Lazarus90
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rma error on an affyBatch from ArrayExpress?
... While testing ArrayExpress with E-GEOD-17215 I see Error in rma(ae) : VECTOR_ELT() can only be applied to a 'list', not a 'character' being thrown by rma applied to the downloaded AffyBatch - shown below. Not sure whether this is a problem with the source data at ArrayExpress or stupidity on my ow ...
arrayexpress written 8.2 years ago by Ross Lazarus90 • updated 8.2 years ago by Martin Morgan ♦♦ 20k
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Answer: A: Is anyone developing an extensible Galaxy-like interface for Bioconductor?
... Thanks - for the record, the Trac instance for Galaxy source code and the wiki including mirror setup documentation is at http://g2.trac.bx.psu.edu/ The main analysis (free) site is http://main.g2.bx.psu.edu/ I recommend that you make yourself an account (top right of the page) and login - otherwis ...
written 9.3 years ago by Ross Lazarus90
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Answer: A: Is anyone developing an extensible Galaxy-like interface for Bioconductor?
... Mark, just to set the record straight; your statement about lack of persistence for Galaxy histories applies *only* to anonymous (non- logged in) users. Galaxy histories are unlimited in number, and are *permanent* (at least until the main site runs out of disk space) for logged in users. Accounts ...
written 9.3 years ago by Ross Lazarus90
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Comment: C: Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off
... Hi, Mark - if you need any help finessing Galaxy, please don't hesitate to ask me directly as I'd be very happy to help. If you keep notes on your progress that we can repurpose as developer documentation for BioC/R developers, please send it along and I'll make sure it gets added to the Galaxy wiki ...
written 9.3 years ago by Ross Lazarus90
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Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off topic)
... >> Message: 7 Date: Fri, 01 Aug 2008 15:52:22 -0400 From: "Deanne >> Taylor" Subject: [BioC] Is anyone >> developing an extensible Galaxy-like interface for Bioconductor? To: >> Message-ID: >> <48933135.2DE5.00B2.0 at hsph.harvard.edu> Content-Type: text/p ...
genetics annotation written 9.3 years ago by Ross Lazarus90 • updated 9.3 years ago by Mark Cowley910
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Announcement: Software developer training for Galaxy, Tuesday, October 23 4:00pm - 6:00pm, San Diego (just before the ASHG meeting)
... The Galaxy and Rgenetics projects are offering a free 2 hour tutorial for software developers specifically for genomics software developers developers planning on attending this year?s American Society of Human Genetics meeting in San Diego and interested in ways of making their work easily accessed ...
genetics annotation written 10.1 years ago by Ross Lazarus90
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ADVERTISEMENT: statistical programmer position available, Boston
... With apologies for disturbing the vast majority of list readers *not* looking for work, I have a position open for a statistical programmer to work on a statistical genetics software development grant (see http://rgenetics.org) Experience with R, external C/C++ function interfaces and (ideally) Pyt ...
genetics written 10.5 years ago by Ross Lazarus90
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x11() failure on recent R builds
... > Date: Thu, 7 Sep 2006 07:38:33 -0700 (PDT) > From: "D.Enrique ESCOBAR ESPINOZA" > Subject: [BioC] X11 problem > To: bioconductor at stat.math.ethz.ch > Message-ID: <20060907143834.3932.qmail at web30503.mail.mud.yahoo.com> > Content-Type: text/plain; charset=iso-8859-1 > ...
written 11.2 years ago by Ross Lazarus90

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