User: takashi.k1201

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Posts by takashi.k1201

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Comment: C: DESeq2 Normalized Counts for Mfuzz
... It was mentioned in https://support.bioconductor.org/p/73347/ ...
written 6 months ago by takashi.k12010
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Comment: C: DESeq2 Normalized Counts for Mfuzz
... Hi, rbenel Could you tell how did you import normalized objects (rld or vsd) to Mfuzz? Just eset <- new('ExpressionSet', exprs=mat2, phenoData=phenodf)? But if so, how did you include group information? Thanks for your time! ...
written 6 months ago by takashi.k12010
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Comment: C: model for LRT
... OK! Thanks! ...
written 6 months ago by takashi.k12010
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Comment: C: model for LRT
... Thank you for your valuable comments! I now understand what I want cannot be tested. So, I changed phenotype data from what I showed to "ids","group","seq" "ind01","untreated","seq1" "ind02","untreated","seq1" "ind03","untreated","seq1" "ind04","untreated","seq1" "ind05","untreated","seq1" "ind06"," ...
written 6 months ago by takashi.k12010
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model for LRT
... Hi, I have 12 RNA-Seq data sequenced at a time and another 3 data sequenced later. All of them have sex and treatment/untreatment information. I designed phenotype data as follows. "ids","sex","treatment","seq","group" "ind01","female","untreated","seq1","untreatedFemale" "ind02","female","untrea ...
deseq2 lrt written 6 months ago by takashi.k12010 • updated 6 months ago by Michael Love24k

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