User: TJ

gravatar for TJ
TJ0
Reputation:
0
Status:
New User
Last seen:
4 months ago
Joined:
7 months, 1 week ago
Email:
t*********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by TJ

<prev • 9 results • page 1 of 1 • next >
0
votes
1
answer
204
views
1
answers
Comment: C: plotPlatePosition and plate_position
... Thank you, Aaron. Got it, thanks for clarification. Looking at my plates individually, there are "missing" cells that were not selected for sequencing because they didn't make it past quality control steps. ...
written 6 months ago by TJ0
0
votes
1
answer
204
views
1
answers
Comment: C: plotPlatePosition and plate_position
... I have a follow up question about plate_position please: I know that plate_position can used as a variable for  plotExplanatoryVariables. If I have several 96-well plates that all have certain positions empty in every well for control purposes (e.g. H7-H12), such that now I have 90 cells per plate f ...
written 6 months ago by TJ0
0
votes
1
answer
176
views
1
answers
Comment: C: removing rows from SingleCellExperiment container
... Much more elegant. Thank you! ...
written 6 months ago by TJ0
0
votes
1
answer
176
views
1
answers
Comment: C: removing rows from SingleCellExperiment container
... This is a follow up question regarding factors (sorry if this is not the right forum for this, I can re-post to stacksoverflow or BioStars if that's more appropriate). If I have my SingleCellExperiment container, mySCE with counts and normcounts, and with a factor for cell clusters under colData (fo ...
written 6 months ago by TJ0
0
votes
1
answer
176
views
1
answers
Comment: C: removing rows from SingleCellExperiment container
... Thank you, Aaron! This definitely clarifies my misunderstanding and confusion with regards to factors. And thank you for the solution and advice here! ...
written 6 months ago by TJ0
0
votes
1
answer
176
views
1
answers
Comment: C: removing rows from SingleCellExperiment container
... Hopefully fixed now (I had to edit 2-3 times because it didn't look proper). ...
written 6 months ago by TJ0
3
votes
1
answer
176
views
1
answer
removing rows from SingleCellExperiment container
... Hi, I'm trying to figure out how to remove a set of genes from my SingleCellExperiment container (sce). I have a data.frame called mito.genes with a list of genes as shown here: Entrez_ID Symbol Ensembl_ID 1 66445 Cyc1 ENSMUSG00000022551 2 18597 Pdha1 ENSMUSG00000 ...
subsetting scrnaseq sce singlecellexperiment written 6 months ago by TJ0 • updated 6 months ago by Aaron Lun24k
0
votes
1
answer
204
views
1
answers
Comment: C: plotPlatePosition and plate_position
... Thanks, Aaron! That makes sense re first paragraph - I was clearly confused/misunderstood. I do have my metadata loaded and matched to my SCE object, except that I had my cell positions in colData named Cell.Position instead of plate_position. I changed the field name to plate_position, now plotPlat ...
written 7 months ago by TJ0
3
votes
1
answer
204
views
1
answer
plotPlatePosition and plate_position
... Hi All, I am attempting to use the plotPlatePosition function in scater and having some issues with it. Specifically, I have a 96-well plate where the data are incomplete. I have "Cell.Position" as metadata data added to my sce object using colData() where locations are listed as A1, A2, A12, B2, B ...
R scater singlecellexperiment written 7 months ago by TJ0 • updated 7 months ago by Aaron Lun24k

Latest awards to TJ

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 263 users visited in the last hour