User: daphne mouzaki RI

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Posts by daphne mouzaki RI

<prev • 8 results • page 1 of 1 • next >
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Agilent arrays information
... Dear all, I am trying to find information about Agilent one channel arrays and it's extremely difficult to find something "complete". I mean I need a simple description of how the platform is, comparing to Affymetrix chips, how you preprocess them and analyse your data comparing to other platforms. ...
written 11.9 years ago by daphne mouzaki RI80
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Answer: A: (no subject)
... Thank you Johannes! I'll try that! Cheers, Daphne ...
written 13.1 years ago by daphne mouzaki RI80
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table values
... Hi Johannes and thanks for your reply. The PietrLand.csv file is the file that contains the gene name, regulation (-1,1 down, up), the Breed(Pietrain=1, Landrace=2) and the Time (1,2,3,..7 which stands for 2,4,8,12,16,24,30 hours that the samples were taken respectively). Each gene was down or up r ...
written 13.1 years ago by daphne mouzaki RI80 • updated 13.1 years ago by Johannes Freudenberg30
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Table values in R
... Hi, I have an excel file containing Gene name, Regulation, Breed and Time. I have two breeds that I Have symbolised 1=Pietrain and 2=landrace and I also symbolised 7 time points, 1,2,3,4,5,6,7 for 2,4,8,12,16,24,30 hours that the samples were taken. My problem is that I want to create a table with ...
written 13.1 years ago by daphne mouzaki RI80
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Answer: A: (no subject)
... Thank you Sean.I'll try that. -----Original Message----- From: Sean Davis [mailto:sdavis2@mail.nih.gov] Sent: 21 September 2006 16:46 To: bioconductor at stat.math.ethz.ch Cc: daphne mouzaki (RI) Subject: Re: [BioC] (no subject) On Thursday 21 September 2006 11:23, daphne mouzaki (RI) wrote: > ...
written 13.1 years ago by daphne mouzaki RI80
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(no subject)
... Hi everyone, I have to add a legend to my heatmap which will include the range of the colors. I have used heatmap() to produce it and not heatmap.2().From other inquiries I understood that the most efficient way would be to use heatmap.2() and to use that you have to install gplots.As I was told in ...
written 13.1 years ago by daphne mouzaki RI80
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Top gene list
... Hi and thanks for your response, actually topTable and Write.fit works if the object that I have is a MArrayLM object but. The problem is that I have an object "Bgene" which is a list and includes all the columns of interest.I am sorry that I wasn't clear.I have already generated the results but I ...
limma assign written 13.1 years ago by daphne mouzaki RI80
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topTable gene list
... hi, I have generated a list of significant genes for 3 time points separately using the function "decideTests"in Limma package.Using this function I generated foldchanges and FDR for every gene using method Benjamini and Hochberg ("BH") and p.value=0.05. I was wondering if it is possible to generat ...
limma written 13.1 years ago by daphne mouzaki RI80 • updated 13.1 years ago by Giovanni Coppola250

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