User: Xinxia Peng

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Xinxia Peng120
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Posts by Xinxia Peng

<prev • 12 results • page 1 of 2 • next >
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Answer: A: CLF/PGF parser
... Hi All, I want to know if there is a difference between any two samples out of 7 in this situation: I am doing single channel analysis of two color arrays using Limma. The dataset has 7 different samples and each sample has different number of biological replicates (2 to 4). I included an coeffici ...
written 12.5 years ago by Xinxia Peng120
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Comment: C: AnnBuilder with custmerized GO annotation
... In the particular example, the corresponding protein on GO website is 'ARY2_HUMAN'. It has one associated GO term GO:0004060, the same one as I got from the example. But the evidence code is 'TAS'. I am wondering if it is related to the data stored on the bioconductor site, or something happened alo ...
written 12.6 years ago by Xinxia Peng120
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Comment: C: AnnBuilder with custmerized GO annotation
... Thanks. I thought about it, but I did not find the 'E' in this example from GO website: http://www.geneontology.org/GO.evidence.shtml Another question is for GOstats: is the evidence code involved in the enrichment analysis? ======================= Here I repeat part of the annotation that I got: ...
written 12.6 years ago by Xinxia Peng120
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AnnBuilder with custmerized GO annotation
... Hi All, I am trying to reproduce the example given in 'Basic Functions of AnnBuilder'. Here is what I got for the GO part of the annotation: GO [1,] "GO:0004060 at E" [2,] "GO:0004060 at E" [3,] "NA" [4,] "NA" [5,] "GO:0008320 at NR;GO:0004866 at NR;GO:0006886 at NR" [6,] "NA" [7,] "N ...
annotation go gostats written 12.6 years ago by Xinxia Peng120 • updated 12.6 years ago by Nianhua Li870
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Answer: A: oligo on R 2.4.1?
... Hi Jenny, Under Linux, you can install a local copy of both R and related packages yourself anywhere inside your home directory. I got both packages installed. Best, Xinxia -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] ...
written 12.8 years ago by Xinxia Peng120
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Answer: A: Looking for R package for Nimblegen expression data
... Great. I will do that. Thanks, Xinxia -----Original Message----- From: Todd Richmond [mailto:todd@nimblegen.com] Sent: Thursday, February 01, 2007 1:28 PM To: Xinxia Peng Cc: Benilton Carvalho; bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Looking for R package for Nimblegen expression dat ...
written 12.9 years ago by Xinxia Peng120
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Looking for R package for Nimblegen expression data
... I was told by Nimblegen that the XYS file is not always available for expression data. Any suggestions? Thanks, Xinxia -----Original Message----- From: Benilton Carvalho [mailto:bcarvalh@jhsph.edu] Sent: Monday, January 29, 2007 10:00 AM To: Xinxia Peng Cc: bioconductor at stat.math.ethz.ch Subje ...
oligo makeplatformdesign written 12.9 years ago by Xinxia Peng120
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Answer: A: Looking for R package for Nimblegen expression data
... OK. I will let you know what I get. Thanks, Xinxia -----Original Message----- From: Benilton Carvalho [mailto:bcarvalh@jhsph.edu] Sent: Monday, January 29, 2007 10:00 AM To: Xinxia Peng Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Looking for R package for Nimblegen expression data Y ...
written 12.9 years ago by Xinxia Peng120
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Answer: A: Looking for R package for Nimblegen expression data
... Great. Is it the devel package? It seems that it needs R 2.5.0? Xinxia -----Original Message----- From: Benilton Carvalho [mailto:bcarvalh@jhsph.edu] Sent: Monday, January 29, 2007 9:49 AM To: Xinxia Peng Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Looking for R package for Nimblegen ...
written 12.9 years ago by Xinxia Peng120
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Looking for R package for Nimblegen expression data
... Hello, Could someone suggest a R package for handling Nimblegen expression arrays? Thanks, Xinxia ...
written 12.9 years ago by Xinxia Peng120

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