User: cottrellka

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cottrellka0
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Posts by cottrellka

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Comment: C: Remove "no_feature" and "alignment_not_unique" counts before using EdgeR or Dese
... Thanks for the input. ...
written 4 weeks ago by cottrellka0
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Remove "no_feature" and "alignment_not_unique" counts before using EdgeR or Deseq2
... This is my first time using EdgeR or DeSeq2. I used HTSeq-Count to get counts for reads aligning to CDS (this is for ribosome profiling) for each gene. I obviously have a fair number of multi-aligning reads and reads that don't align to the feature (CDS). Should I remove these before running EdgeR o ...
edger deseq2 written 5 weeks ago by cottrellka0 • updated 5 weeks ago by Gordon Smyth36k

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