User: kballa

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Posts by kballa

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Comment: C: Using Salmon and DESeq2 to compare metagenomic content between samples
... Thank you for the input, Michael. Here are some rows of the counts matrix: > head(txi_sp$counts) Run1 Run2 Run3 Run4 Run5 Run6 [Polyangium]_brachysporum 2.000 0.000 2.00 0.000 0.000 0.000 Acacia_fri ...
written 6 months ago by kballa0
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Using Salmon and DESeq2 to compare metagenomic content between samples
... I am interested in quantifying the microbial content of an RNAseq experiment in a way that allows for statistically comparing abundances of species between samples. There are a few tools that have been built for this that I am using, but I was curious to hear if anyone has thoughts on using pseudo-a ...
deseq2 salmon written 6 months ago by kballa0 • updated 6 months ago by Michael Love24k

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