User: steve.standage

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Posts by steve.standage

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Comment: C: tximport error with kallisto .h5 files
... Thank you for your help! ...
written 9 months ago by steve.standage0
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Comment: C: tximport error with kallisto .h5 files
... Thank you for your help! ...
written 9 months ago by steve.standage0
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Comment: C: tximport error with kallisto .h5 files
... When I run the commands using the abundance.tsv files: txdb <- makeTxDbFromGFF("gencode.vM20.annotation.gff3.gz") # Pulled this file from: https://www.gencodegenes.org/mouse/release_M20.html k <- keys(txdb, keytype = "TXNAME") tx2gene <- select(txdb, k, "GENEID", "TXNAME") ...
written 9 months ago by steve.standage0
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tximport error with kallisto .h5 files
... This is my first time analyzing RNA sequencing data for gene expression. I am trying to import count data from Kallisto to DESeq2 using the tximport package following the instructions [here][1]. After running this code: filenames <- list.files("./Data", full.names = TRUE, pattern = "*abundan ...
deseq2 tximport kallisto written 9 months ago by steve.standage0 • updated 9 months ago by Michael Love25k

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