User: m.t.lorenc

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m.t.lorenc0
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Comment: C: extracting scaffoldnames from HiC contact matrix
... Does Bioconductor have any packages which are able to read `hic` files and get this way the scaffold names? ...
written 8 months ago by m.t.lorenc0
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extracting scaffoldnames from HiC contact matrix
... Hello, I ran 3d-dna and loaded the results into JuiceBox ( https://www.youtube.com/watch?v=Nj7RhQZHM18 ). The screenshot ( https://imgur.com/a/izTbb54 ) shows the loaded results. Scaffolds and their names are in green boxes within the chromosomes bins (blue boxes). I am interested to extract the sc ...
hic written 8 months ago by m.t.lorenc0 • updated 8 months ago by bioparticles.melly0

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