User: tarekzakaria.badr

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Posts by tarekzakaria.badr

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Comment: C: Deseq2: How to compine reseult of different pairwise comparisons
... Thanks a lot for your feedback. But what would be the case if i have a matched control specific to each experiment? I tried doing some kinda of a mixed condition as ( ~ condition + genotpye) but it didn't work out with me. Do you have some suggestion on how to tackle this if one needs to normalize a ...
written 29 days ago by tarekzakaria.badr0
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Comment: C: Deseq2: How to compine reseult of different pairwise comparisons
... Thanks a lot for your feedback and answer. What about normalizing against the control. I couldn't find a clear approach on how to do that. As example i would like to normalize each genotype against the common control then compare them against each other. Is it possible to do that? Many thanks in adv ...
written 4 weeks ago by tarekzakaria.badr0
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Deseq2: How to compine reseult of different pairwise comparisons
... Hi, I've a small question concerning the differential expression analysis in DESeq2. So I've a 16 samples divided into 4 groups (control, ko1, ko2 and ko3 ). so one condition with 4 levels as i understood form the vignette and previous questions regarding this matter here that performing wald stat ...
deseq2 written 8 weeks ago by tarekzakaria.badr0 • updated 8 weeks ago by Michael Love22k

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