User: Bio_conducta

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Posts by Bio_conducta

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Comment: C: Dealing with HSP in blast output with GRanges
... Thank you for your help it was exactly what I needed. ...
written 9 months ago by Bio_conducta 0
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Comment: C: Dealing with HSP in blast output with GRanges
... Because the coordinates are wrong, we should get: qseqid qstart qend scaffold_1 20 300 scaffold_1 906 1223 scaffold_1 906 1223 scaffold_3 14000 20300 scaffold_4 800 1000 scaffold_8 42822 43265 scaffold_8 3 500 scaffold_8 2 500 scaffold_8 ...
written 9 months ago by Bio_conducta 0
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Dealing with HSP in blast output with GRanges
... Hi everyone, I have actually a blast file format such as: qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore strand scaffold_1 YP_009352567.1 27.0 278 163 9 20 50 222 487 1.000000e-16 94.0 + scaffold_1 YP_009352567.1 35.5 166 93 2 130 300 63 227 2.0000 ...
R grangers written 9 months ago by Bio_conducta 0 • updated 9 months ago by Martin Morgan ♦♦ 23k

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