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User: florian.dufey

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Posts by florian.dufey

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Comment: C: How to specify contrasts in DESeqDataSetFromMatrix
... Hello Michael, thank you very much for your fast reply! Of course I already had a close look at the vignette. I find your answer quite astonishing. The result of the LRT will depend on the contrasts chosen to build the model matrix. I don't see how this can be changed in the "results" command when ...
written 9 days ago by florian.dufey0
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How to specify contrasts in DESeqDataSetFromMatrix
... Dear forum, I am trying to set up a data set in DESeq2 with DESeqDataSetFromMatrix to perform afterwards a likelihood ratio test in DESeq. In DESeq, I can specify a both a full and a reduced model using the standard R "model.matrix" function in which I can also set the "contrasts" (e.g. "contr.su ...
deseq2 written 10 days ago by florian.dufey0 • updated 10 days ago by Michael Love21k

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