User: ayang

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ayang0
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Posts by ayang

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ReactomePA only showing 1 result
... After I run the enrichPathway() on my genelist, I tried to visualize it using barplot(), but it is only showing one enrichment pathway. In my S4 results, I have definitely more than 1. I was wondering if anyone can help? My input data looks like this head(genelist,50) > [1] 14013 7658 ...
reactomepa written 4 months ago by ayang0
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Comment: C: DESEq2 rownames: NULL
... Thank you so much Michael! the argument was in the wrong bracket ...
written 8 months ago by ayang0
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DESEq2 rownames: NULL
... My input is from the HISAT2 Stringtie protocol extracted with the provided python script. My code in R is: countData <- as.matrix(read.csv("gene_count_matrix.csv"), row.names = "gene_id") ## make the colData colData <- read.csv("pheno_data.csv", sep=",", row.names=1) ## check if the colnames ...
deseq2 R written 8 months ago by ayang0 • updated 8 months ago by Michael Love25k

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