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Posts by thye
... Finally found the solution. Had to add sex and phenotype data from the PLINK FAM-file to the gds genotype file in an extra step. FAM<-read.table(file="extdata/zztest.fam", header=FALSE) names(FAM)=c("FAMID", "ID", "FA","MO","SEX","STATUS") mydat <- data.frame(scanID = FAM$ID, famID=FAM$FAMI ...
... Hello , I successfully imported PLINK binary files with the SNPRelate snpgdsBED2GDS function for analysis with GWAStools package. Unfortunately, when I try to perform an association analysis with the assocRegression module of the GWAStools I get the following error: > fam.fn <- "extdat ...
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