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Answer: A: Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
8.8 years ago Shi, Tao ▴ 720
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm vanillaice
8.8 years ago Shi, Tao ▴ 720
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Comment: C: reading .idat files using genotype.Illumina in crlmm
8.9 years ago Shi, Tao ▴ 720
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reading .idat files using genotype.Illumina in crlmm
crlmm idat
updated 8.9 years ago by ▴ 1000 • written 8.9 years ago by ▴ 720
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Comment: C: Results changed after DESeq2 upgrade
9.2 years ago Shi, Tao ▴ 720
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Results changed after DESeq2 upgrade
deseq2
updated 9.2 years ago by 41k • written 9.2 years ago by ▴ 720
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Answer: A: comisc in biomart
9.3 years ago Shi, Tao ▴ 720
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comisc in biomart
biomaRt
9.3 years ago Shi, Tao ▴ 720
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strange log2FoldChange estimates
RNASeq DOSE DESeq2 RNASeq DOSE DESeq2
9.7 years ago Shi, Tao ▴ 720
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Answer: A: strange log2FoldChange estimates
9.7 years ago Shi, Tao ▴ 720
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Comment: C: multiple comparison adjustment of p values in LIMMA
10.6 years ago Shi, Tao ▴ 720
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multiple comparison adjustment of p values in LIMMA
limma limma
updated 10.6 years ago by 50k • written 10.6 years ago by ▴ 720
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Comment: C: multiple comparison adjustment of p values in LIMMA
10.6 years ago Shi, Tao ▴ 720
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Comment: C: limma: NA coefficients due to missing values
10.9 years ago Shi, Tao ▴ 720
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limma: NA coefficients due to missing values
limma limma
updated 10.9 years ago by 50k • written 11.0 years ago by ▴ 720
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929
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arrayQualityMetrics: huge object size!?
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 720
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Comment: C: arrayQualityMetrics: huge object size!?
12.2 years ago Shi, Tao ▴ 720
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Fw: a bug in heatmap.plus?
12.9 years ago Shi, Tao ▴ 720
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633
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Answer: A: mapping a gene id to determine if it's ribosomal
13.0 years ago Shi, Tao ▴ 720
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getSequence ensmebl biomaRt
biomaRt biomaRt
13.0 years ago Shi, Tao ▴ 720
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Comment: C: desktop workstation configuration
13.4 years ago Shi, Tao ▴ 720
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desktop workstation configuration
updated 13.4 years ago by ★ 1.7k • written 13.4 years ago by ▴ 720
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Comment: C: question on "uniCox"
13.4 years ago Shi, Tao ▴ 720
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question on "uniCox"
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 720
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Cy5: methylated or unmethylated?
methylumi methylumi
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 720
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Comment: C: Cy5: methylated or unmethylated?
13.6 years ago Shi, Tao ▴ 720
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Comment: C: Simulation of the beta average
13.6 years ago Shi, Tao ▴ 720
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Comment: C: DNA-Methylation, CopyNumber Results
13.6 years ago Shi, Tao ▴ 720
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Comment: C: DNA-Methylation, CopyNumber Results
13.6 years ago Shi, Tao ▴ 720
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Comment: C: DNA-Methylation, CopyNumber Results
13.6 years ago Shi, Tao ▴ 720
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Answer: A: HTqPCR
13.6 years ago Shi, Tao ▴ 720
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illumina Infinium HumanMethylation27 detection-p-value
updated 13.7 years ago by ★ 1.2k • written 13.7 years ago by ▴ 720
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Comment: C: illumina Infinium HumanMethylation27 detection-p-value
13.7 years ago Shi, Tao ▴ 720
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3
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problems when using "readCcg" in "affxparser" to parse .CNCHP file
affy affy
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 720
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Comment: C: problems when using "readCcg" in "affxparser" to parse .CNCHP file
14.2 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt doesn't load RCurl automatically
15.4 years ago Shi, Tao ▴ 720
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biomaRt doesn't load RCurl automatically
SNP biomaRt SNP biomaRt
15.4 years ago Shi, Tao ▴ 720
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biomaRt get exon intron structure of a transcrit
Cancer biomaRt Cancer biomaRt
15.5 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt get exon intron structure of a transcrit
15.5 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt get exon intron structure of a transcrit
15.5 years ago Shi, Tao ▴ 720
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Answer: A: gene count in a GO term
15.6 years ago Shi, Tao ▴ 720
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3
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gene count in a GO term
affy affy
15.6 years ago Shi, Tao ▴ 720
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2
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940
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"start" filter in biomaRt
15.7 years ago Shi, Tao ▴ 720
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940
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Answer: A: "start" filter in biomaRt
15.7 years ago Shi, Tao ▴ 720
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GOTERM in GO.db returns NULL
GO GO
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 720
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biomaRt:getBM error when query is large
GO GO
15.7 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt:getBM error when query is large
15.7 years ago Shi, Tao ▴ 720
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create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affxparser affy affxparser
16.0 years ago Shi, Tao ▴ 720
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Answer: A: create Affymetrix .chp file for viewing in affy Integrated Genome Browser
16.0 years ago Shi, Tao ▴ 720
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1
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973
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create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affy
updated 16.0 years ago by ★ 6.5k • written 16.0 years ago by ▴ 720
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