User: zengjia0808

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Posts by zengjia0808

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Comment: C: error in keytype performing "enrichGO" from clusterprofiler
... Dear Dr. Yu: I double checked the values in org.Tguttata.eg.db. They do have the "GOALL", "ONTOLOGYALL" value, as I run the following command: keys <- head(keys(org.Tguttata.eg.db)) select(org.Tguttata.eg.db, keys=keys, columns = c("GOALL","ONTOLOGYALL")) This give you the results as: ...
written 3 months ago by zengjia08080
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Comment: C: error in keytype performing "enrichGO" from clusterprofiler
... Thank you so much for the answer. I wonder is there any example to build a OrgDb from scratch that can be used in clusterprofiler? I really appreciate your help. ...
written 3 months ago by zengjia08080
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error in keytype performing "enrichGO" from clusterprofiler
... Hi, I am working on a non-model organism that I can't download the annotation package from the annotationhub. So I need to build an orgDb from scratch in order to perform the GO enrichment analysis. For this organism, I already have the mapping of the gene ID (internal) to the GO ID. So I used the ...
clusterprofiler written 4 months ago by zengjia08080 • updated 3 months ago by Guangchuang Yu1.1k

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