User: lucas.michel

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Posts by lucas.michel

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Comment: C: hyperGTest not working on custom annotation package
... Thank you very much for the prompt reply. Let me know if I can help in any way. ...
written 8 months ago by lucas.michel0
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Comment: C: hyperGTest not working on custom annotation package
... Hi James, thank you very much for your reply. Indeed my schema is NOSCHEMADB. On the other hand, the central identifier of my annotation package is ENTREZGID (it is mandatory for makeOrgPackage()) but the IDs I was passing to the function and the gene universe are gene symbols. I have changed both ...
written 8 months ago by lucas.michel0
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hyperGTest not working on custom annotation package
... I have created a custom annotation package using makeOrgPackage(). After succesfully creating it, installing it and loading it I have am trying to make a functional enrichment using it's annotations (which is why I created it) using GOstats. I can load it into the params object with no errors but wh ...
gostats annotationdbi go.db written 8 months ago by lucas.michel0 • updated 8 months ago by James W. MacDonald51k
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Comment: C: Annotation of org.Pf.plasmo.db out of date.
... Thank you very much for the reply! I'll to do it myself then. ...
written 8 months ago by lucas.michel0
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Annotation of org.Pf.plasmo.db out of date.
... The annotation in the package seems out of date. The command org.Pf.plasmo_dbInfo() shows that the plasmo.db release used is 28 while the current release is 41. I am not sure where should I ask if there is the possibility to update it. Thank you very much, Lucas ...
org.pf.plasmo.db written 8 months ago by lucas.michel0 • updated 8 months ago by James W. MacDonald51k

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