User: tjal0001

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tjal00010
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Posts by tjal0001

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Comment: C: RSBML wrong edges
... I appreciate if someone could help me to understand the logic. I've read the documentation as well but have no idea why edges that I'm after are not retrieved?! Kind Regards, ...
written 8 months ago by tjal00010
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Comment: C: RSBML wrong edges
... Sorry for delay Michael. Please find the file in the following link: https://drive.google.com/open?id=11MM169V7H1wbt-51YfUbG0I5EnPh1f7G ...
written 8 months ago by tjal00010
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Comment: C: RSBML wrong edges
... Hi Michael, Thanks for always helping me. I am working with mTOR signalling pathway and following are the codes: I added first two lines in case you need to install rsbml. If you check the graph, you can see multiple edges specially between species started with 's' are not included in the grap ...
written 9 months ago by tjal00010
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RSBML wrong edges
... Hi, I am using rsbml package in R to create a biological network in R. The problem is that it seems rsbml extracted wrong edges: I created a graph using the following code: g <- rsbml_graph(doc) But I see edges are wrong. In cell designer, I have an edge from species 's2428' to 's2421'. Bu ...
rsbml R celldesigner written 9 months ago by tjal00010 • updated 8 months ago by Michael Lawrence11k
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Error in reading sbml file
... Hi, I tried to read sbml model using the following commands: file <- system.file("sbml", "msb2010108-s2.xml", package = "rsbml") doc <- rsbml_read(file) But I always get this error: **Error: File unreadable.** I tried following commands and it works fine: doc <- rsbml_read( ...
rsbml R written 9 months ago by tjal00010 • updated 9 months ago by Michael Lawrence11k

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