User: gmumuxi

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gmumuxi0
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Posts by gmumuxi

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Comment: C: What will lead DESeq2 shows no DEGs if workflow adopted is okay?
... Thanks for your reply! Since outliers here is 1269, it mean the "outlier" are genes, not samples. However I considered the outlier problem, it seems no obvious steps(function or tool) that to quantitative identification and remove them in DESeq2 wokflow? ...
written 6 weeks ago by gmumuxi0
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What will lead DESeq2 shows no DEGs if workflow adopted is okay?
... Hi, ddsFullCountTable <- DESeqDataSetFromMatrix(countData = mouse_count, colData = mouse_pheno, design = ~ batch + age + gender + treatment) dds <- DESeq(ddsFullCountTable, test="LRT", reduced = ~ batch + age + gender) res_dds <- results(dds, contrast = c("treatm ...
deseq2 written 6 weeks ago by gmumuxi0 • updated 6 weeks ago by arfranco130

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