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Posts by hong
Comment: A: Counts, abundance in Tximport
... Thanks for you reply Michael Then how about the counts? In the Tximport web manual It's written "We could alternatively generate counts from abundances, using the argument countsFromAbundance, scaled to library size, "scaledTPM", or additionally scaled using the average transcript length, av ...
... Hi I'm using Tximport for assembling transcript level expression data into gene-level expression data The tool itself works very well But In the output there are four columns abundance" "counts" "length" "countsFromAbundance" "5_8S_rRNA" 0 0 ...
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