User: jmoon1194

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jmoon11940
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Posts by jmoon1194

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Answer: A: cnetplot graph independently.
... So it sounds like you want to be able to subset an `enrichResult-class` based on the category and plot that single category. I found a solution in this github issue [here](https://github.com/GuangchuangYu/enrichplot/issues/17). You can plot a single category at a time like this: ``` x <- ego[ego ...
written 25 days ago by jmoon11940
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Limma - Using removeBatchEffect before differential expression analysis
... For a dataset I'm working on, we would like to use the limma package for differential expression analysis. We are using `limma::removeBatchEffect` (doing it for downstream analysis) before using limma for differential expression analysis. Would it be okay to still include the batch covariate in the ...
limma differential expression batch effect written 5 months ago by jmoon11940 • updated 5 months ago by James W. MacDonald50k

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