User: o.giannakopoulou

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Posts by o.giannakopoulou

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Comment: C: GENESIS pcrelate() write gds file doesn't work
... I just noticed that reply. This was a typo. I was using R/3.5 ...
written 4 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... Many thanks for the help. I had used the king$kinship but initially it was not working since the colnames and rownames are different. I changed them and is working fine now ...
written 7 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... For technical reasons I have to use R-3.4.1 version and GENESIS_2.8.1 instead of the new version. So I have to adjust my script to my previous version but I have been stuck. I have calculated the KING-robust estimates using the snpgdsIBDKING function from the SNPRelate package. However when I try to ...
written 7 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... For technical reasons I have to use R-3.4.1 version and GENESIS_2.8.1 instead of the new version. So I have to adjust my script to my previous version but I have been stuck. I have calculated the KING-robust estimates using the snpgdsIBDKING function from the SNPRelate package. However when I try to ...
written 7 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... Thanks for the amazing support ...
written 7 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... Thanks Stephanie for the confirmation. I'm working on a cluster with limitations in running time so I'm having some problems to set up the pipeline and I was wondering if you could give me any advice. After some attempts, I have managed to run the PC-Relate command in my dataset and I have saved th ...
written 7 months ago by o.giannakopoulou0
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Comment: C: GENESIS pcrelate() write gds file doesn't work
... Thank you Stephanie for the swift reply. I am a new user and I had found that option in an older genesis vignette maybe. Just to confirm, the two pcrelate outputs in the current version are the data.frames. kinBtwn and kinSelf, right? Many thanks again for the help Olga ...
written 7 months ago by o.giannakopoulou0
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GENESIS pcrelate() write gds file doesn't work
... Hello, I'm trying to save the output of pcrelate in gds format using the write.as.gds=TRUE in my command but it doesn't work. I'm getting the following error: Error in .local(gdsobj, ...) : unused argument (write.to.gds = TRUE) I have installed GENESIS following the Bioconductor instructions: if ...
gds genesis pcrelate written 7 months ago by o.giannakopoulou0 • updated 7 months ago by Stephanie M. Gogarten720

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