User: adhikb

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adhikb0
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Posts by adhikb

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Perform time course rna seq analysis at once with a single design or separate differential analysis for each time point
... Hi all, I have time course data: 0, 2, 4, 6, and 8 hours. 0 hr has 6 control samples. All other time points have 6 control and 6 treated samples. Total 54 samples. (The 6 replicates are basically 6 different donors.) Here is what I used to compute DE for different time points using contrast. ...
deseq2 design written 5 weeks ago by adhikb0 • updated 5 weeks ago by Michael Love24k
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Comment: C: edgeR design matrix not of full rank
... Great! Thank you so much! ...
written 4 months ago by adhikb0
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edgeR design matrix not of full rank
... Hello, I am performing DEG using edgeR. I am trying to design a matrix so that I can make comparisons control versus treated at different time points taking into account the baseline. Replicates: 6 (i.e. 6 patients) Conditions: control(C) vs treated(F) Time: 0h (control: 6, which is the baseline ...
edger written 4 months ago by adhikb0 • updated 4 months ago by Aaron Lun24k

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