User: agustin.gonvi

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Cleveland, OH
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Posts by agustin.gonvi

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Rsubread installation problem
... Hi, I updated today to R version 3.6.0 (2019-04-26) -- "Planting of a Tree" and I am having trouble installing Rsubread. The message in console is bellow. Any suggestion to solve this? Thanks >if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") ...
rsubread biocparallel written 8 days ago by agustin.gonvi10 • updated 8 days ago by Gordon Smyth37k
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Answer: A: Minimum number of samples per treatment/group for WGCNA analysis
... You need a recommended minimum of 15 samples to build a network using all samples together regardless of treatment. Intuitively I will say that if groups members are evenly distributed is better. On a second step, you will correlate modules with treatments and test for significance, the sample size ...
written 10 days ago by agustin.gonvi10
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Consensus modules preservation WGCNA
... Hi, I created a consensus modules from 2 coexpression networks from different transgenic animals, and I would like to see which of those modules are not preserved in wild-type by measuring module preservation between consensus and wt. Is it possible to do this? I am asking because module preserva ...
wgcna networks written 9 weeks ago by agustin.gonvi10 • updated 9 weeks ago by Peter Langfelder1.9k

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