User: Sheldon Pang
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- 8 months, 2 weeks ago
Posts by Sheldon Pang
... For example: Gene id ENSG00000283638 mapped to multiple symbols MIR106A MIR19B2 MIR92A2 MIR363 MIR20B MIR18B Gene id ENSG00000015479 and ENSG00000280987 both mapped to symbol MATR3 It looks to me these are incorrect. Any idea? Thanks. > library(recount) > recount_genes$symbol \# Chara ...
Number of reads from recount are greater than target library size (40 million) for TCGA and GTEx projects
... I just quickly check the data from TCGA project and found that some number of reads are greater than the target library size 40 million. Any ideas? Similarly for GTEx too. The code is as follows: library("recount") accession = "TCGA" download_study(accession, type = "rse-gene") load(fi ...
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