User: abrsoule

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abrsoule20
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Posts by abrsoule

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Comment: C: Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: Bioc
... if (length(rtime(z)) != valscantime2) { nrt <- length(rtime(z)) adj_starts_at <- which(rtime(z) == scantime2[1]) adj_ends_at <- which(rtime(z) == scantime2[length(scantime2)]) if ...
written 3 days ago by abrsoule20
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Comment: C: Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: Bioc
... rtmaxdiff <- abs(diff(c(scantime1[length(scantime1)], scantime2[length(scantime2)]))) if (rtmaxdiff > (5 * mstdiff)) { rtmax <- min(scantime1[length(scantime1)], scantime2[length(scantime2)]) scantime1 <- scantime1[scan ...
written 3 days ago by abrsoule20
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Comment: C: Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: Bioc
... 9: bplapply(objL, function(z, cntr, cntrPr, parms) { message("Aligning ", basename(fileNames(z)), " against ", basename(fileNames(cntr)), " ... ", appendLF = FALSE) suppressMessages(curP <- profMat(z, method = "bin", step = binSize(parms), ...
written 3 days ago by abrsoule20
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Comment: C: Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: Bioc
... Using traceback() for the fatal error: 12: stop(.error_bplist(res)) 11: bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM) 10: bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPARAM) ...
written 3 days ago by abrsoule20
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Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argument is of length zero
... Hello, I have a large dataset of MS and MSMS data on crude chemical extracts from tropical tree leaves. I have successfully created and run an XCMS pipeline that has allowed us to classify and identify several compounds within these samples that have been run on a 150mm C18 column using reverse pha ...
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mzR unable to open uncorrupted mzXML file
... Hello, I am fairly new to R and to Bioconductor and have been running some code (previously written by another member of our cohort) to analyze our mass spec data. I've run into a couple of issues which I now can't seem to fix. 1) Our peak picking code loops through large numbers of files, nearly ...
xcms mzr software error written 5 months ago by abrsoule20

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