User: ege.dedeoglu

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Posts by ege.dedeoglu

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Comment: C: Analyzing a RNA-Seq dataset with paired samples and 2 batches
... I really could not understand what you are saying as English is not my first language. The batches contain 22 and 18 samples respectivly. Both the patients samples (TP1 & TP2) are in the same batch. My first design was :( ~patient + condition) but it gave me a distribution graph as the batches ...
written 20 days ago by ege.dedeoglu0
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Analyzing a RNA-Seq dataset with paired samples and 2 batches
... Hello everyone, I have been tackling this issue for some time now. I have a dataset which has 20 patients and 40 samples (the samples are paired). There are two timepoints that I am checking differential expression for (eg. TP1 & TP2). However 11 of these patients are in one sequencing batch ( ...
sva deseq2 combat written 21 days ago by ege.dedeoglu0 • updated 21 days ago by Michael Love25k
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Comment: C: Two microarrays merging (different experiments) - Error with esets (inSilicoMerg
... Dear Adam, Did you manage to find an answer regarding the problem, as I have the exact same problem. ...
written 5 months ago by ege.dedeoglu0

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