User: edejong

gravatar for edejong
edejong0
Reputation:
0
Status:
New User
Last seen:
5 months, 3 weeks ago
Joined:
6 months, 2 weeks ago
Email:
e**************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by edejong

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
208
views
1
answers
Comment: C: featurecounts Rsubread ERROR on exon_id
... Sorry to bother you again, but I am not sure if I understand it completely. When I open my annotation file, I do see 'exon_id' as one of the fields, when 'exon' is stated in column 3. So than I would assume I can use this. And as specified before, it is working that way in version 1.28.1 I would li ...
written 6 months ago by edejong0
0
votes
1
answer
208
views
1
answers
Comment: C: featurecounts Rsubread ERROR on exon_id
... Thanks. Probably need to use `GTF.attrType.extra` to retrieve the exon_ids as part of the annotation. However, this does not result in counts table with exon_ids. I find it quite dangerous to assume that the order of the count table is in the same order as the annotation table. ...
written 6 months ago by edejong0
0
votes
1
answer
208
views
1
answers
Comment: C: featurecounts Rsubread ERROR on exon_id
... It also works in an earlier version of Rsubread: sessionInfo() R version 3.4.1 (2017-06-30) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS: /hpc/local/CentOS7/common/lang/R/3.4.1/lib64/R/lib/libRblas.so LAPA ...
written 6 months ago by edejong0
2
votes
1
answer
208
views
1
answer
featurecounts Rsubread ERROR on exon_id
... Dear, Currently, I would like to calculate exon counts using package Rsubread 1.32.0, function featurecounts. Inputs: 1. Bam file based on paired end RNA sequencing. 2. Annotation file in GTF format, downloaded from GenCode v27. *More details about Bam:* - Created based on uBam. - Aligned wi ...
rsubread error software error R featurecounts written 6 months ago by edejong0 • updated 6 months ago by Wei Shi3.2k

Latest awards to edejong

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour